Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

0.6.0b0 - 2021-01-21

Added

• Add more SGS models options: dynamic, shear_imp, vreman in addition to the default one constant. Dynamic remains to be tested.

• Add more boundary conditions, including no-slip.

• Utilities module.

• Output u_star and other global statistics in to spatial_means.txt

• Added cases Python sub package to save different configurations

• Added penalty modules

• Stratification

• Stability functions, i.e. stratification correction terms implemented in strat_correct.f and newton.f for the moeng.f boundary condition

• Sponge region

Changed

• Disabled Coriolis forcing for the time being

• Debug flags during compilations

• Use Snakemake modules

• Upgrade Snek5000 API to 0.8.0

Fixed

• Use of variable properties (SGS model) with temperature

0.5.0b0 - 2020-09-02

Added

• Parameter section WMLES to toggle experimental code modifications to boundary conditions and SGS model: (bc-3rd, npow, sgs-delta, temporal filtering)

• New subcommand launch release to generate a Fortran-only tarball

• Non uniform meshes 11 and 12 and ability to specify hard coded mesh coordinates

Changed

• Migrate to Nek5000 v19

Removed

• Output of velocity gradient files which relies on torque_calc subroutine.

Fixed

• Requirements: pymech and zstandard

• Working SNEK_DEBUG options and appopriate debug flags in Snakefile

0.4.0b0 - 2020-07-15

Added

• Total shear stresses are saved in statistics files

• Helper bash functions pwd-nek

• Parameter to set wall location != 0

• WIP: simulation loader

Changed

• All #define macros were translated to fortran parameters

• Use gcc-8 in local machine archmage

• Coordinates for stats module: z is vertical direction

• Snakemake, simul.py (renamed from simple.py), organize.py improvements

Fixed

• Critical bug in SGS: unintialized parameter C0

• Statistics sampling rate

• Documentation build

Removed

• Bulk velocity forcing

0.3.0a0 - 2020-06-02

Added

• Writes initial condition

Changed

• Implicit none in user subroutines (#6)

• Initial condition only adds perturbation near wall (637727aa)

• Uses snek5000

Removed

• set_forcing

Fixed

• Coriolis term sign

• Userf only has a coriolis term and equivalent of geostrophic pressure gradient term

0.2.2 - 2020-05-08

Added

• Pre-commit: black, flake8, isort fixing and linting support

• Jupyterlab and ipykernel configuration snakemake rules

• Job management script - organize.py

• New module: const

Changed

• Parameters for Maronga case

• Compilation is now parallel

• Two-step archival, tar and compress

Fixed

• Snakemake: gslib dependency before compiling

• Snakemake: Tee output to log file

Removed

• Requirements files produced using pip-tools

0.2.1 - 2020-04-14

Added

• Tar shell functions in activate script

• Module eturb.clusters for job submission

Changed

• Conda environment packages

• Reduced pressure residual tolerance for divergence check

Fixed

• Bugfixes for simulation parameter loading, restart

• Snakefile dependencies for running a simulation

0.2.0 - 2020-03-22

Added

• KTH toolbox

• Coriolis force

• Job submission in cluster

• More user_params

Changed

• Archives use zstd compression

• user_params is a dictionary

Fixed

• Initial condition bug in setting velocities in useric

• Cs - Cs**2 in eddy_visc

• Assert exit code of snakemake results in tests

• Subroutine set_forcing uses ux.. instead of vx

0.1.1 - 2020-01-27

Added

• Templates in abl.templates subpackage

• Expand parameters and write methods in class Operators

• Improved tests and documentation

• Solver abl respects parameters and writes box and SIZE files.

Changed

• Snakecase for nek parameters

0.1.0 - 2020-01-23

Added

• Uses fluidsim framework for creating a scripting layer

• Package abl with a single module and an abl.Output class

• New sub-packages and modules under eturb: solvers, output, info, log, make, magic, operators

• Testing with pytest, and CI on GitHub actions

• Detailed documentation

• Versioning with setuptools_scm

Changed

• Extra requirements [test] renamed to [tests]

• Rename case files 3D_ABL -> abl and directory abl_nek5000 -> abl

• Overall reorganization of modules and Snakemake + configuration files.

0.0.1 - 2020-01-17

Added

• Scripting for managing run parameters eturb.params

• Python packaging

• Sphinx + Doxygen + Breathe documentation